PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_012569737.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Cicereae; Cicer
Family bHLH
Protein Properties Length: 525aa    MW: 57813.7 Da    PI: 6.0066
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_012569737.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH50.34.2e-16321367455
                     HHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
             HLH   4 ahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                      hn  ErrRRdriN+++  L+el+P +      K +Ka++L +A+eY+ksLq
  XP_012569737.1 321 VHNLSERRRRDRINEKMKALQELIPRC-----NKSDKASMLDEAIEYLKSLQ 367
                     6*************************8.....6******************9 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF474599.03E-21314383IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.105.7E-21314375IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profilePS5088818.146317366IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000834.46E-17320371No hitNo description
PfamPF000101.2E-13321367IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003534.9E-18323372IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0006783Biological Processheme biosynthetic process
GO:0009740Biological Processgibberellic acid mediated signaling pathway
GO:0009959Biological Processnegative gravitropism
GO:0010100Biological Processnegative regulation of photomorphogenesis
GO:0010161Biological Processred light signaling pathway
GO:0010187Biological Processnegative regulation of seed germination
GO:0015995Biological Processchlorophyll biosynthetic process
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0010313Molecular Functionphytochrome binding
GO:0042802Molecular Functionidentical protein binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 525 aa     Download sequence    Send to blast
MNHYVPDFDI QMDDEEDYPI HISKKPSLQN DEIMELLWQN GQVVVQSQNH RQFRKPPPPT  60
TNTGDRVIPE RGIRSSDAEH YNINQHLFMQ EDEMASWLFD SMNEDPPFSR HDFSAGTLFH  120
PPTVTGDQKY GGVVQSNGRE SEPLQQPRPA AAPRPPIPPS KKPEQATCRK QNFGHFSTRS  180
NAGSEPGASS SSMIAAAQES TVVDSCDTPF MAAKTYVAST LSETARSTAE TGFVSMSSAG  240
KAETSAGGRE TTTVDMTVTS SLGGSSESAE PVQKEAVLDR KRKGREPDES EFQSEDVDFE  300
SKEEKKQIRG SASKRSRAAE VHNLSERRRR DRINEKMKAL QELIPRCNKS DKASMLDEAI  360
EYLKSLQLQV QMMSMGCGMV PMMFPGIRQY MPAMGMGMGM GLGMEMGMGM NRTVMPFPNM  420
IASTPLPAAT VAAHFGQRFA MAPFHMPHVA AAAPDSSDNN PLNSLGSSAT LSPDQSRIPN  480
FTDTYHQFLG PHQLQMQLMQ SMNQQSVNKP GTSGAQDNPE KHQSG
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1325330ERRRRD
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00074ChIP-chipTransfer from AT2G20180Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004495025.10.0PREDICTED: transcription factor PIF1-like
RefseqXP_012569737.10.0PREDICTED: transcription factor PIF1-like
RefseqXP_012569738.10.0PREDICTED: transcription factor PIF1-like
TrEMBLA0A072VK930.0A0A072VK93_MEDTR; Transcription factor
STRINGGLYMA13G19250.30.0(Glycine max)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G20180.32e-61phytochrome interacting factor 3-like 5